miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|160580527|gb|EY350159.1|EY350159 AATTTATTATGTCATATATTTAGTATCTAAAATCTCGCACAACCATTATTTTTTTGCTGTTTGTCTAAGAATATTACAGA
ATAAAATTCAGTTGATTGGAAACTAAAATTTGTTTGATGAACGAAACAAACAAATAAATACAACGTAATTACACAATTAA
GCAAAATCGAAAAAAGAAAGACATGATGTGGCATTAAAAAGTTTTTTTAAAAATTAGCGTTTTAGTTGTGATTGAAATGT
CATTAATTTATTGTAAAGTTCTCGATTTGATGTCGCTGAACATTTTGACAGGACCAAATCGACGTCATCTTCGTTTTTTG
TCTGTATTGCCAGATCACCTGCCTGCTCTAATAGCCCTAATTTGATATGATAAATGACCAGATGTTCCGGTAGGACTTTG
GATAAATAATTTTTACCCTCGTTCACGTTATTGTACTTGATACAAACATCAACAAAGGGCTCGTAGCCAATGGGAGACTT
TTTACTTTTCGAAAATTTATCCAGTTCCAACCACTGACCCAATTCGGCCAACTTTTGAATCTTTAACCACCAAAATCTTT
TGTCACTTAGTTTGAAATCTTTCCTCATCTGTTCAACGCGCTTGTGTTCCTCCTTACCAATGAGTTGACCAATGGTATCA
TCGATGGAAAGATCAATGAATGGAAGATTCATCTCCTCCTCCAAACGTCTTTGAAGTTTCAGTAGTTTTAT




Most similar to sp|Q5E9L7|VPS16_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16
            homolog OS=Bos taurus GN=VPS16 PE=2 SV=1
          Length = 839

 Score =  142 bits (357), Expect = 3e-33
 Identities = 68/148 (45%), Positives = 102/148 (68%)
 Frame = -1

Query: 660  FIDLSIDDTIGQLIGKEEHKRVEQMRKDFKLSDKRFWWLKIQKLAELGQWLELDKFSKSK 481
            F+DLS+ DT+  LI   ++KR EQ+ +DF++ DKR WWLK+  LA+L  W EL+KFSKSK
Sbjct: 691  FLDLSLHDTVTTLILSGQNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSK 750

Query: 480  KSPIGYEPFVDVCIKYNNVNEGKNYLSKVLPEHLVIYHIKLGLLEQAGDLAIQTKNEDDV 301
            KSPIGY PFV++C+K +N  E K Y S+V PE  V   + +G + QA D+AI+ +NE ++
Sbjct: 751  KSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEAEM 810

Query: 300  DLVLSKCSATSNRELYNKLMTFQSQLKR 217
             LVLS C+  ++    +K+   ++Q ++
Sbjct: 811  SLVLSHCTGATDGATADKIQRARAQAQK 838